KTH Royal Institute of Technology in Stockholm has grown to become one of Europe’s leading technical and engineering universities, as well as a key centre of intellectual talent and innovation. We are Sweden’s largest technical research and learning institution and home to students, researchers and faculty from around the world. Our research and education covers a wide area including natural sciences and all branches of engineering, as well as in architecture, industrial management, urban planning, history and philosophy.
The School of Biotechnology offers a curriculum that reflects the multidisciplinary nature of Biotechnology, integrating theoretical and applied science in undergraduate and graduate courses. The school has six departments with about 300 employees, located at AlbaNova University Center in Stockholm and Science for Life Laboratory in Solna. The Biotechnology research within the school is internationally well recognized.
Two summer job positions are offered by KTH:
- Genetic engineering of cyanobacteria: The applicant will perform molecular cloning of expression vectors in cyanobacteria. Applicant will perform CRISPR/Cas-based gene editing in cyanobacteria. Applicant will characterize mutant strains using bioreactor cultivation.
See the Euraxess page for info about this job.
2. RNA sequencing of cyanobacteria: The applicant will perform cultivation, RNA extraction, and RNA sequencing of cyanobacteria strains. The applicant will perform analysis of RNA sequencing data.
See the Euraxess page for info about this job.
Deadline for applications: 30 May 2017
Project In the BelSPO funded MICROBIAN project (Microbiome diversity and function in the Sør Rondane Mountains, East Antarctica), coordinated by the Laboratory of Protistology and Aquatic Ecology, remote sensing analysis of soil crusts in a high latitude cold desert will be combined with field experiments and metagenomics studies to map their spatial distribution, community composition and metabolic capabilities. In addition, phylogenetic and physiological studies will be conducted on newly isolated bacteria and cyanobacteria, known to be present and highly abundant in the region from previous metagenomics analyses.
Your tasks will be organized to design two complementary theses:
- Participation to field campaigns to the Antarctic. The first campaign is planned for Dec. 2017 – Jan. 2018 and includes sample collection for DNA and RNA analyses, mapping of soil crusts using drones and in situ measurements (i.a. PAM fluorometry), setting up and maintaining of field experiments.
- Library preparation for amplicon and shotgun based metagenomics and subsequent bioinformatics data analysis.
- Isolation, cultivation, phenotyping and genotyping of Polar microorganisms using a range of growth conditions.
- Analysis and interpretation of remote sensing data and georeferencing and mapping of sampling locations.
Deadline for applications is 28 May 2017.
Visit the Euraxess webpage of this job offer for more information.
We seek an environmental modeller at the Australian Rivers Institute (Griffith University, Nathan Campus) to carry out research and manage a number of model applications for lakes and river basins, focusing attention on harmful algal blooms and generating scenarios to assist with bloom management and water quality restoration.
The role will be multidisciplinary, involving applications of models to integrate physical, chemical and biological processes, as well as interacting with social scientists and economists to extend the reach and relevance of model simulations.
The applicant should have demonstrated quantitative skills and have applied models as part of their PhD research. Experience with presenting model outputs and interacting with field practitioners and stakeholders would be valuable.
The Australian Rivers Institute within Griffith Sciences is one of Australia’s largest university aquatic ecosystem research groups with globally recognised expertise in river, catchment and coastal ecosystems and the interaction with these systems in society. It brings together 150 staff and post-graduate students at the Nathan and Gold Coast campuses.
The successful applicant will work in a research team led by Professors David Hamilton and Michele Burford. This team is committed to validating model applications using field and experimental data from lakes and river basins.
Enquiries to David Hamilton : email@example.com
See the webpage with this job offer for more information.
This info was shared by Dr Eleanor Jennings, Chair of the NETLAKE COST Action.
Water Insight B.V. is looking for a highly skilled professional to develop a statistical model forecasting potentially harmful cyanobacteria blooms.
Do you have a PhD in optical remote sensing, or in aquatic ecology? Do you have proven skills in statistical modelling, and an interest in cyanobacteria growth and optical remote sensing of water quality? We have a nice opportunity for you!
You will get the chance to work abroad for one year in a very innovative commercial environment, develop yourself in business innovation and with a tailored training program, and meanwhile work on a model to forecast potentially harmful blooms in lakes.
Application deadline : 30/04/2017, 12:00 (Brussels)
See the Job Description in the Euraxess website.
A postdoc position is available for three years working on high frequency monitoring data from lakes and rivers, based in the Marine Institute facility in Mayo, Ireland and employed by Dundalk Institute of Technology (working with Eleanor Jennings (DkIT) and Elvira de Eyto (MI)) on the BEYOND 2020 project.
We are seeking a highly motivated PhD candidate for the development of chemometric tools for the detection of different compounds in waters matrices, including underground water, drinking water and wastewater. The PhD is in the framework of the Industrial Doctorates Plan co-funded by the Catalan Government. It will be carried out in a collaboration between the company, s::can Iberia Sistemas de Medición S.L.U (part of the s::can group http://www.s-can.at/) and a research centre ICRA, Catalan Institute for Water Research, http://www.icra.cat . This is an excellent opportunity to join a highly innovative environment that combines the academic supervision of the thesis with the mentoring of the company s::can Iberia as part of an employment contract. The position is for three years. The academic supervisors are Dr Oriol Gutierrez and Dr Wolfgang Gernjak (both ICRA) and the industry supervisor is Dr Jordi Raich (s::can Iberia Sistemas de Medición S.L.U.).
More information about the Industrial Doctorate Plan here: http://doctoratsindustrials.gencat.cat/en/pages/home
More information and applications here: http://www.icra.cat/ofertes/position-industrial-doctorate/71
This info was shared by E. Jennings, NETLAKE.
The Institute for Biodiversity and Ecosystem Dynamics is looking for 3 excellent PhD candidates in sponge biology / coral reef ecology to join our team.
EU ERC Starting Grant: SPONGE ENGINE — Fast and efficient sponge engines drive and modulate the food web of reef ecosystems
Coral reefs are iconic examples of biological hotspots, highly appreciated because of their ecosystem services. Yet, they are threatened by human impact and climate change, highlighting the need to develop tools and strategies to curtail changes in these ecosystems. Remarkably, ever since Darwin’s descriptions of coral reefs, it has been a mystery how one of Earth’s most productive and diverse ecosystems thrives in oligotrophic seas, as an oasis in a marine desert. Our team recently discovered the ‘sponge loop’ pathway (De Goeij et al. Science 2013) that efficiently retains and transfers energy and nutrients on the reef. We recognized sponges as potential (and so far neglected) key ecosystem drivers, and accumulated evidence on sponge loops in other ecosystems, such as deep-sea coral reefs. As a result, current reef food web models, lacking sponge-driven resource cycling, are incomplete and need to be redeveloped. However, mechanisms that determine the capacity of sponge ‘engines’, how they are fuelled, and drive communities are unknown.
The aim of this ERC project is to systematically establish the novel reef food web framework, integrating sponges as key ecosystem drivers. To this end, sponges will be evaluated on functional traits (morphology, associated microbes, pumping rate) in the processing of dissolved food, the main fuel of the engine. At the community level, we will assess to what extent these different traits are a driving force in structuring reef ecosystems, from fuel input (primary producers) to engine output (driving and modulating the consumer food web). This framework derived from a Caribbean reef ecosystem will then be implemented in a sponge-driven food web model, a much-needed foundation to test and predict future scenarios of changes in reef communities. Ultimately, we will test and generalize the novel food web framework at a tropical Indo-Pacific, a temperate Mediterranean, and a cold-water North-Atlantic reef.
See details for those positions in the Euraxess page.
The Department of Plant Biophysics and Biochemistry (PBB, headed by Prof. Hendrik Küpper) as part of the Institute of Plant Molecular Biology (IPMB) within the Biology Centre of the Czech Academy of Sciences (BCAS).
The project of this PhD student aims at extending the understanding of mechanisms of the regulation of photosynthesis for nitrogen fixation in Trichodesmium, for more realistic estimation of the productivity of the oceans. This marine, filamentous, diazotrophic cyanobacterium has a particularly fast regulation of photosynthesis. Phycourobilin isoforms turned out to be the key players in the fast regulation during the daily activity cycle (by their reversible (un)coupling to/from photosystems) as well as in the long‐term regulation (by changes in their expression levels) in response to iron and light stress, they shall be the main focus of this project. This will involve UV/VIS fluorescence kinetic and FRAP measurements for investigating biophysical properties, combined with metalloproteomics for investigating effects of iron limitation, RAMAN spectroscopy and pulsechase stable isotope labelling for analysing accumulation/transport of metabolites.
See details for this positions and how to apply in the Euraxess webpage.
The Research Centre for Toxic Compounds in the Environment (RECETOX) is a research and educational facility of the Masaryk University in Brno, Czech Republic. Research of the Centre focuses on environmental fate and effects of toxic compounds, ecological and human risk assessment. RECETOX offers excellent research facilities and inspiring international environment.
RECETOX is currently offering 3 positions of
postdoctoral scientists (f/m)
in the EU H2020 funded project of Human BioMonitoring for Europe (HBM4EU).
The research topics are:
• Biomonitoring and suspect screening of emerging chemicals in human matrices
• Pharmacokinetic modeling of organic contaminants in the human body
• Linking exposures and health by Adverse Outcome Pathways
You can download the call here: